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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_6433HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein (507 aa)    
Predicted Functional Partners:
DM42_6434
annotation not available
 
 0.943
DM42_6432
annotation not available
       0.745
DM42_6431
annotation not available
       0.700
WL94_06235
HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein
 
 
0.647
WI67_24030
annotation not available
 
 0.606
DM42_7266
annotation not available
 
 0.589
WI67_31945
ABC transporter substrate-binding protein; 3A0103s03R: lysine-arginine-ornithine-binding periplasmic family protein; Belongs to the bacterial solute-binding protein 3 family
 
 0.587
WL94_11705
HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein
 
 
0.567
glnP
HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein
 
 
0.566
WI67_21395
ABC transporter substrate-binding protein; 3A0103s03R: lysine-arginine-ornithine-binding periplasmic family protein; Belongs to the bacterial solute-binding protein 3 family
 
 0.565
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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