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DM42_655 protein (Burkholderia cepacia) - STRING interaction network
"DM42_655" - lp_hng_hel_AbrB: transcriptional regulator, AbrB family domain protein in Burkholderia cepacia
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_655lp_hng_hel_AbrB- transcriptional regulator, AbrB family domain protein (105 aa)    
Predicted Functional Partners:
DM42_654
annotation not available (152 aa)
 
   
  0.980
DM42_653
Conserved hypothetical protein (125 aa)
 
          0.945
traI
ICE_TraI_Pfluor- integrating conjugative element relaxase, PFGI-1 class (614 aa)
 
          0.801
DM42_600
Conserved hypothetical protein (245 aa)
   
          0.762
DM42_651
annotation not available (119 aa)
   
          0.743
DM42_598
Conserved hypothetical protein (130 aa)
   
          0.741
DM42_616
Conserved hypothetical protein (86 aa)
   
          0.739
DM42_583
annotation not available (70 aa)
 
          0.738
DM42_582
annotation not available (248 aa)
   
          0.734
DM42_614
Conserved hypothetical protein (113 aa)
   
          0.732
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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