WL94_37900 protein (Burkholderia cepacia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

WL94_37900

HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein (240 aa)

Predicted Functional Partners:

WL94_37910

0.990

WL94_37895

0.988

WL94_37905

0.980

WI67_13005

0.851

WI67_21395

0.844

WL94_04835

0.844

WI67_20875

0.843

WI67_31945

0.843

WI67_31170

0.841

WI67_00705

0.837

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
WI67_00705	WL94_37900	DM42_1657	DM42_6587	annotation not available	HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein	0.837
WI67_00705	WL94_37905	DM42_1657	DM42_6588	annotation not available	HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein	0.741
WI67_00705	WL94_37910	DM42_1657	DM42_6589	annotation not available	annotation not available	0.719
WI67_13005	WI67_20875	DM42_2671	DM42_4328	ABC transporter substrate-binding protein; 3A0103s03R: lysine-arginine-ornithine-binding periplasmic family protein; Belongs to the bacterial solute-binding protein 3 family	ABC transporter substrate-binding protein; 3A0103s03R: lysine-arginine-ornithine-binding periplasmic family protein; Belongs to the bacterial solute-binding protein 3 family	0.804
WI67_13005	WL94_37900	DM42_2671	DM42_6587	ABC transporter substrate-binding protein; 3A0103s03R: lysine-arginine-ornithine-binding periplasmic family protein; Belongs to the bacterial solute-binding protein 3 family	HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein	0.851
WI67_13005	WL94_37905	DM42_2671	DM42_6588	ABC transporter substrate-binding protein; 3A0103s03R: lysine-arginine-ornithine-binding periplasmic family protein; Belongs to the bacterial solute-binding protein 3 family	HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein	0.754
WI67_13005	WL94_37910	DM42_2671	DM42_6589	ABC transporter substrate-binding protein; 3A0103s03R: lysine-arginine-ornithine-binding periplasmic family protein; Belongs to the bacterial solute-binding protein 3 family	annotation not available	0.743
WI67_20875	WI67_13005	DM42_4328	DM42_2671	ABC transporter substrate-binding protein; 3A0103s03R: lysine-arginine-ornithine-binding periplasmic family protein; Belongs to the bacterial solute-binding protein 3 family	ABC transporter substrate-binding protein; 3A0103s03R: lysine-arginine-ornithine-binding periplasmic family protein; Belongs to the bacterial solute-binding protein 3 family	0.804
WI67_20875	WL94_37900	DM42_4328	DM42_6587	ABC transporter substrate-binding protein; 3A0103s03R: lysine-arginine-ornithine-binding periplasmic family protein; Belongs to the bacterial solute-binding protein 3 family	HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein	0.843
WI67_20875	WL94_37905	DM42_4328	DM42_6588	ABC transporter substrate-binding protein; 3A0103s03R: lysine-arginine-ornithine-binding periplasmic family protein; Belongs to the bacterial solute-binding protein 3 family	HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein	0.745
WI67_20875	WL94_37910	DM42_4328	DM42_6589	ABC transporter substrate-binding protein; 3A0103s03R: lysine-arginine-ornithine-binding periplasmic family protein; Belongs to the bacterial solute-binding protein 3 family	annotation not available	0.740
WI67_21395	WL94_37900	DM42_4213	DM42_6587	ABC transporter substrate-binding protein; 3A0103s03R: lysine-arginine-ornithine-binding periplasmic family protein; Belongs to the bacterial solute-binding protein 3 family	HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein	0.844
WI67_21395	WL94_37905	DM42_4213	DM42_6588	ABC transporter substrate-binding protein; 3A0103s03R: lysine-arginine-ornithine-binding periplasmic family protein; Belongs to the bacterial solute-binding protein 3 family	HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein	0.741
WI67_21395	WL94_37910	DM42_4213	DM42_6589	ABC transporter substrate-binding protein; 3A0103s03R: lysine-arginine-ornithine-binding periplasmic family protein; Belongs to the bacterial solute-binding protein 3 family	annotation not available	0.741
WI67_31170	WL94_37900	DM42_5355	DM42_6587	ABC transporter substrate-binding protein; 3A0103s03R: lysine-arginine-ornithine-binding periplasmic family protein	HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein	0.841
WI67_31170	WL94_37905	DM42_5355	DM42_6588	ABC transporter substrate-binding protein; 3A0103s03R: lysine-arginine-ornithine-binding periplasmic family protein	HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein	0.742
WI67_31170	WL94_37910	DM42_5355	DM42_6589	ABC transporter substrate-binding protein; 3A0103s03R: lysine-arginine-ornithine-binding periplasmic family protein	annotation not available	0.737
WI67_31945	WL94_37900	DM42_5214	DM42_6587	ABC transporter substrate-binding protein; 3A0103s03R: lysine-arginine-ornithine-binding periplasmic family protein; Belongs to the bacterial solute-binding protein 3 family	HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein	0.843
WI67_31945	WL94_37905	DM42_5214	DM42_6588	ABC transporter substrate-binding protein; 3A0103s03R: lysine-arginine-ornithine-binding periplasmic family protein; Belongs to the bacterial solute-binding protein 3 family	HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein	0.747
WI67_31945	WL94_37910	DM42_5214	DM42_6589	ABC transporter substrate-binding protein; 3A0103s03R: lysine-arginine-ornithine-binding periplasmic family protein; Belongs to the bacterial solute-binding protein 3 family	annotation not available	0.743

page 1 of 3

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About