STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WL94_33540Hemolysin secretion protein D; RND_mfp: efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family (399 aa)    
Predicted Functional Partners:
WL94_33545
2A0602: RND transporter, hydrophobe/amphiphile efflux-1 family protein
 
 0.979
WL94_33550
outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein
 
 
 0.948
WL94_02450
2A0602: RND transporter, hydrophobe/amphiphile efflux-1 family protein
 
 0.875
DM42_4607
2A0602: RND transporter, hydrophobe/amphiphile efflux-1 family protein
 
 0.874
WL94_09550
2A0602: RND transporter, hydrophobe/amphiphile efflux-1 family protein
 
 0.874
WL94_29660
2A0602: RND transporter, hydrophobe/amphiphile efflux-1 family protein
 
 0.853
WL94_28910
2A0602: RND transporter, hydrophobe/amphiphile efflux-1 family protein
 
 0.852
acrB
annotation not available
 
 0.850
WL94_39215
2A0602: RND transporter, hydrophobe/amphiphile efflux-1 family protein
 
 0.849
WL94_07250
2A0602: RND transporter, hydrophobe/amphiphile efflux-1 family protein
 
 0.847
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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