STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_6652annotation not available (374 aa)    
Predicted Functional Partners:
DM42_6650
annotation not available
 
 
 0.986
DM42_6651
annotation not available
 
   
 0.980
WL94_11090
annotation not available
 
 
 0.865
DM42_6653
annotation not available
 
     0.775
WL94_11095
annotation not available
 
  
 0.760
WL94_08185
annotation not available
 
 
 0.748
DM42_6649
annotation not available
       0.720
DM43_1101
annotation not available
 
  
 0.580
WI67_20310
annotation not available
 
     0.556
WL94_25230
soxA: sarcosine oxidase, alpha subunit; Belongs to the GcvT family
 
 
 0.544
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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