WL94_33160 protein (Burkholderia cepacia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

WL94_33160

Uncharacterized protein; dctM: TRAP transporter, DctM subunit (450 aa)

Predicted Functional Partners:

WL94_33170

0.988

WL94_33165

0.978

DM42_6231

0.834

uxuA

0.682

WL94_08850

0.562

WL94_10590

0.461

kdgR

0.406

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM42_6231	WL94_10590	DM42_6231	DM42_4512	TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence domain protein	annotation not available	0.535
DM42_6231	WL94_33160	DM42_6231	DM42_6690	TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence domain protein	Uncharacterized protein; dctM: TRAP transporter, DctM subunit	0.834
DM42_6231	WL94_33165	DM42_6231	DM42_6689	TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence domain protein	annotation not available	0.649
DM42_6231	kdgR	DM42_6231	DM42_5023	TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence domain protein	annotation not available	0.421
WL94_08850	WL94_33160	DM42_2484	DM42_6690	annotation not available	Uncharacterized protein; dctM: TRAP transporter, DctM subunit	0.562
WL94_08850	uxuA	DM42_2484	DM42_6284	annotation not available	Mannonate dehydratase; Catalyzes the dehydration of D-mannonate	0.885
WL94_10590	DM42_6231	DM42_4512	DM42_6231	annotation not available	TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence domain protein	0.535
WL94_10590	WL94_33160	DM42_4512	DM42_6690	annotation not available	Uncharacterized protein; dctM: TRAP transporter, DctM subunit	0.461
WL94_10590	WL94_33170	DM42_4512	DM42_6688	annotation not available	C4-dicarboxylate ABC transporter; dctP: TRAP transporter solute receptor, DctP family protein	0.535
WL94_33160	DM42_6231	DM42_6690	DM42_6231	Uncharacterized protein; dctM: TRAP transporter, DctM subunit	TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence domain protein	0.834
WL94_33160	WL94_08850	DM42_6690	DM42_2484	Uncharacterized protein; dctM: TRAP transporter, DctM subunit	annotation not available	0.562
WL94_33160	WL94_10590	DM42_6690	DM42_4512	Uncharacterized protein; dctM: TRAP transporter, DctM subunit	annotation not available	0.461
WL94_33160	WL94_33165	DM42_6690	DM42_6689	Uncharacterized protein; dctM: TRAP transporter, DctM subunit	annotation not available	0.978
WL94_33160	WL94_33170	DM42_6690	DM42_6688	Uncharacterized protein; dctM: TRAP transporter, DctM subunit	C4-dicarboxylate ABC transporter; dctP: TRAP transporter solute receptor, DctP family protein	0.988
WL94_33160	kdgR	DM42_6690	DM42_5023	Uncharacterized protein; dctM: TRAP transporter, DctM subunit	annotation not available	0.406
WL94_33160	uxuA	DM42_6690	DM42_6284	Uncharacterized protein; dctM: TRAP transporter, DctM subunit	Mannonate dehydratase; Catalyzes the dehydration of D-mannonate	0.682
WL94_33165	DM42_6231	DM42_6689	DM42_6231	annotation not available	TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence domain protein	0.649
WL94_33165	WL94_33160	DM42_6689	DM42_6690	annotation not available	Uncharacterized protein; dctM: TRAP transporter, DctM subunit	0.978
WL94_33165	WL94_33170	DM42_6689	DM42_6688	annotation not available	C4-dicarboxylate ABC transporter; dctP: TRAP transporter solute receptor, DctP family protein	0.982
WL94_33170	WL94_10590	DM42_6688	DM42_4512	C4-dicarboxylate ABC transporter; dctP: TRAP transporter solute receptor, DctP family protein	annotation not available	0.535

page 1 of 2

Network

Neighborhood

Textmining

Fusion

Experiments

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About