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DM42_6827 protein (Burkholderia cepacia) - STRING interaction network
"DM42_6827" - Conserved hypothetical protein in Burkholderia cepacia
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_6827Conserved hypothetical protein (302 aa)    
Predicted Functional Partners:
ligD
NHEJ_ligase_prk- DNA ligase D (948 aa)
 
          0.824
DM42_7099
Ku_bact- Ku protein (338 aa)
 
          0.653
DM42_6826
annotation not available (56 aa)
              0.559
DM42_6719
annotation not available (342 aa)
   
          0.524
WI67_17810
ATP-dependent RNA helicase; Helicase conserved C-terminal domain protein; Belongs to the DEAD box helicase family (465 aa)
              0.477
DM42_389
annotation not available (186 aa)
 
          0.467
WL94_30810
annotation not available (249 aa)
            0.456
purL
Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate (1354 aa)
              0.451
DM42_7117
UDG_fam4- uracil-DNA glycosylase, 4 family protein (221 aa)
 
          0.439
DM42_6828
tonB-siderophor- TonB-dependent siderophore receptor family protein (724 aa)
              0.417
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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