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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_70annotation not available (341 aa)    
Predicted Functional Partners:
WL94_28925
papC N-terminal domain protein
 
 
 0.972
WL94_28930
Fimbrial protein; Pili assembly chaperone PapD, C-terminal domain protein
 
 
 0.969
fimA
annotation not available
 
 
 
 0.896
DM42_3748
annotation not available
  
     0.732
WL94_38880
annotation not available
  
 
   0.731
DM42_821
Conserved hypothetical protein
  
     0.710
bcsE
cellulose_bcsE: cellulose biosynthesis protein BcsE
  
     0.684
WL94_04185
Uncharacterized protein
  
     0.649
DM42_69
Conserved hypothetical protein
     
 0.642
DM42_6026
Conserved hypothetical protein
  
     0.641
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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