DM42_7002 protein (Burkholderia cepacia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DM42_7002

ccmA- heme ABC exporter, ATP-binding protein CcmA (528 aa)

Predicted Functional Partners:

WL94_33235

0.972

WL94_38740

0.806

DM42_4319

0.805

DM42_4318

0.802

WI67_02865

0.790

WI67_32120

0.789

WL94_27460

0.778

WL94_28030

0.771

WL94_35415

0.761

WL94_28780

0.759

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM42_4318	DM42_4319	DM42_4318	DM42_4319	annotation not available	annotation not available	0.989
DM42_4318	DM42_7002	DM42_4318	DM42_7002	annotation not available	ccmA- heme ABC exporter, ATP-binding protein CcmA	0.802
DM42_4319	DM42_4318	DM42_4319	DM42_4318	annotation not available	annotation not available	0.989
DM42_4319	DM42_7002	DM42_4319	DM42_7002	annotation not available	ccmA- heme ABC exporter, ATP-binding protein CcmA	0.805
DM42_7002	DM42_4318	DM42_7002	DM42_4318	ccmA- heme ABC exporter, ATP-binding protein CcmA	annotation not available	0.802
DM42_7002	DM42_4319	DM42_7002	DM42_4319	ccmA- heme ABC exporter, ATP-binding protein CcmA	annotation not available	0.805
DM42_7002	WI67_02865	DM42_7002	DM42_1219	ccmA- heme ABC exporter, ATP-binding protein CcmA	annotation not available	0.790
DM42_7002	WI67_32120	DM42_7002	DM42_5192	ccmA- heme ABC exporter, ATP-binding protein CcmA	annotation not available	0.789
DM42_7002	WL94_27460	DM42_7002	DM42_274	ccmA- heme ABC exporter, ATP-binding protein CcmA	annotation not available	0.778
DM42_7002	WL94_28030	DM42_7002	DM42_154	ccmA- heme ABC exporter, ATP-binding protein CcmA	annotation not available	0.771
DM42_7002	WL94_28780	DM42_7002	DM42_89	ccmA- heme ABC exporter, ATP-binding protein CcmA	annotation not available	0.759
DM42_7002	WL94_33235	DM42_7002	DM42_7001	ccmA- heme ABC exporter, ATP-binding protein CcmA	annotation not available	0.972
DM42_7002	WL94_35415	DM42_7002	DM42_5710	ccmA- heme ABC exporter, ATP-binding protein CcmA	annotation not available	0.761
DM42_7002	WL94_38740	DM42_7002	DM42_5985	ccmA- heme ABC exporter, ATP-binding protein CcmA	annotation not available	0.806
WI67_02865	DM42_7002	DM42_1219	DM42_7002	annotation not available	ccmA- heme ABC exporter, ATP-binding protein CcmA	0.790
WI67_02865	WI67_32120	DM42_1219	DM42_5192	annotation not available	annotation not available	0.809
WI67_32120	DM42_7002	DM42_5192	DM42_7002	annotation not available	ccmA- heme ABC exporter, ATP-binding protein CcmA	0.789
WI67_32120	WI67_02865	DM42_5192	DM42_1219	annotation not available	annotation not available	0.809
WL94_27460	DM42_7002	DM42_274	DM42_7002	annotation not available	ccmA- heme ABC exporter, ATP-binding protein CcmA	0.778
WL94_28030	DM42_7002	DM42_154	DM42_7002	annotation not available	ccmA- heme ABC exporter, ATP-binding protein CcmA	0.771

page 1 of 2

Network

Neighborhood

Databases

Fusion

Textmining

Cooccurrence

Experiments

Coexpression

© STRING Consortium 2019

Credits

Access

Info

About