Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DM42_7027

agaZ_gatZ- D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit (431 aa)

Predicted Functional Partners:

DM42_7028

0.944

DM42_7026

0.913

WL94_35000

0.911

DM42_4847

0.900

DM42_7029

0.882

WL94_08790

0.813

eda

0.800

DM42_7030

0.780

fba

0.615

WL94_37475

0.607

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but resolution at 400 dpi

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

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TSV: tab separated values - can be opened in Excel

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM42_4847	DM42_7027	DM42_4847	DM42_7027	annotation not available	agaZ_gatZ- D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit	0.900
DM42_4847	DM42_7030	DM42_4847	DM42_7030	annotation not available	deoR C terminal sensor domain protein	0.475
DM42_4847	WL94_08790	DM42_4847	DM42_2473	annotation not available	agaZ_gatZ- D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit	0.900
DM42_4847	fba	DM42_4847	DM42_2443	annotation not available	fruBisAldo_II_B- fructose-bisphosphate aldolase, class II, Calvin cycle subtype	0.960
DM42_7026	DM42_7027	DM42_7026	DM42_7027	annotation not available	agaZ_gatZ- D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit	0.913
DM42_7026	DM42_7028	DM42_7026	DM42_7028	annotation not available	annotation not available	0.898
DM42_7026	DM42_7029	DM42_7026	DM42_7029	annotation not available	annotation not available	0.933
DM42_7026	DM42_7030	DM42_7026	DM42_7030	annotation not available	deoR C terminal sensor domain protein	0.749
DM42_7026	WL94_37475	DM42_7026	DM42_7031	annotation not available	annotation not available	0.601
DM42_7027	DM42_4847	DM42_7027	DM42_4847	agaZ_gatZ- D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit	annotation not available	0.900
DM42_7027	DM42_7026	DM42_7027	DM42_7026	agaZ_gatZ- D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit	annotation not available	0.913
DM42_7027	DM42_7028	DM42_7027	DM42_7028	agaZ_gatZ- D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit	annotation not available	0.944
DM42_7027	DM42_7029	DM42_7027	DM42_7029	agaZ_gatZ- D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit	annotation not available	0.882
DM42_7027	DM42_7030	DM42_7027	DM42_7030	agaZ_gatZ- D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit	deoR C terminal sensor domain protein	0.780
DM42_7027	WL94_08790	DM42_7027	DM42_2473	agaZ_gatZ- D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit	agaZ_gatZ- D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit	0.813
DM42_7027	WL94_35000	DM42_7027	DM42_1223	agaZ_gatZ- D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit	annotation not available	0.911
DM42_7027	WL94_37475	DM42_7027	DM42_7031	agaZ_gatZ- D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit	annotation not available	0.607
DM42_7027	eda	DM42_7027	DM42_1181	agaZ_gatZ- D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit	Eda- 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein	0.800
DM42_7027	fba	DM42_7027	DM42_2443	agaZ_gatZ- D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit	fruBisAldo_II_B- fructose-bisphosphate aldolase, class II, Calvin cycle subtype	0.615
DM42_7028	DM42_7026	DM42_7028	DM42_7026	annotation not available	annotation not available	0.898

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Textmining

Coexpression

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