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benB protein (Burkholderia cepacia) - STRING interaction network
"benB" - benzo_1_2_benB: benzoate 1,2-dioxygenase, small subunit in Burkholderia cepacia
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
benBbenzo_1_2_benB- benzoate 1,2-dioxygenase, small subunit (162 aa)    
Predicted Functional Partners:
cbdA
annotation not available (452 aa)
  0.998
benD
annotation not available (258 aa)
 
   
  0.998
WL94_37430
annotation not available (340 aa)
 
 
  0.993
WL94_37415
Catechol_proteo- catechol 1,2-dioxygenase (313 aa)
 
     
  0.914
xylC
annotation not available (489 aa)
     
 
    0.901
DM42_2487
annotation not available (483 aa)
     
 
    0.901
WL94_37410
Muconate lactonizing enzyme; Belongs to the mandelate racemase/muconate lactonizing enzyme family (378 aa)
 
   
  0.895
catC
Muco_delta- muconolactone delta-isomerase (96 aa)
 
   
  0.878
benM
annotation not available (305 aa)
 
     
  0.867
WL94_11025
annotation not available (427 aa)
 
  0.825
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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