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DM42_7099 protein (Burkholderia cepacia) - STRING interaction network
"DM42_7099" - Ku_bact: Ku protein in Burkholderia cepacia
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_7099Ku_bact- Ku protein (338 aa)    
Predicted Functional Partners:
ligD
NHEJ_ligase_prk- DNA ligase D (948 aa)
 
   
  0.986
katE
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide (704 aa)
 
        0.787
DM42_6719
annotation not available (342 aa)
 
          0.688
DM42_6827
Conserved hypothetical protein (302 aa)
 
          0.653
DM42_7120
Conserved hypothetical protein (204 aa)
 
        0.604
WL94_37145
annotation not available (285 aa)
 
        0.563
DM42_7102
Conserved hypothetical protein (53 aa)
 
          0.512
DM42_3582
Conserved hypothetical protein (208 aa)
 
        0.507
DM42_6985
annotation not available (334 aa)
 
        0.463
WI67_12680
annotation not available (151 aa)
   
        0.435
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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