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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_7120Conserved hypothetical protein (204 aa)    
Predicted Functional Partners:
WL94_37145
annotation not available
 
    0.883
WL94_37155
Uncharacterized protein
 
    0.787
WL94_37140
Uncharacterized protein
 
     0.725
ligD
NHEJ_ligase_prk: DNA ligase D
 
     0.714
DM42_7123
Conserved hypothetical protein
 
     0.680
WL94_37130
annotation not available
 
     0.650
DM42_7099
Ku_bact: Ku protein
 
    0.604
DM42_6719
annotation not available
 
     0.590
DM42_6985
annotation not available
 
    0.575
DM42_485
TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence domain protein
 
    0.524
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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