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WL94_36950 protein (Burkholderia cepacia) - STRING interaction network
"WL94_36950" - sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein in Burkholderia cepacia
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WL94_36950sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein (185 aa)    
Predicted Functional Partners:
WL94_36955
annotation not available (97 aa)
 
          0.898
DM42_7197
Conserved hypothetical protein (724 aa)
 
          0.780
DM42_3783
Conserved hypothetical protein (889 aa)
   
          0.776
DM42_2944
Conserved hypothetical protein (267 aa)
   
          0.765
WL94_36930
annotation not available (111 aa)
 
          0.733
WL94_36935
annotation not available (116 aa)
 
          0.729
WL94_36940
annotation not available (107 aa)
   
          0.729
DM42_7070
annotation not available (387 aa)
   
          0.682
DM42_5064
Conserved hypothetical protein (332 aa)
   
          0.653
DM42_1652
annotation not available (125 aa)
   
          0.652
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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