STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WL94_28925papC N-terminal domain protein (817 aa)    
Predicted Functional Partners:
WL94_28930
Fimbrial protein; Pili assembly chaperone PapD, C-terminal domain protein
 
 0.985
DM42_70
annotation not available
 
 
 0.972
fimA
annotation not available
 
 
 0.948
DM42_6254
Pili assembly chaperone PapD, C-terminal domain protein
 
 0.863
DM42_3434
Conserved hypothetical protein
 
 
 0.752
DM42_6253
annotation not available
 
 
 0.716
DM42_3435
Conserved hypothetical protein
 
 
 0.657
DM42_69
Conserved hypothetical protein
     
 0.625
DM42_6256
annotation not available
 
 
 0.587
DM42_2642
Pili and flagellar-assembly chaperone, PapD N-terminal domain protein
 
 
 0.561
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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