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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
narInarI: respiratory nitrate reductase, gamma subunit (227 aa)    
Predicted Functional Partners:
narH
narH: nitrate reductase, beta subunit
 
 0.999
DM42_7206
narG: nitrate reductase, alpha subunit
 0.999
DM42_7201
annotation not available
 
 0.997
narJ
narJ: nitrate reductase molybdenum cofactor assembly chaperone
 
  
 0.997
DM42_7202
annotation not available
 
    0.972
WL94_05475
annotation not available
 
 0.954
nirD
nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit
  
 
 0.939
nirB
nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
  
 
 0.938
WL94_29950
annotation not available
    
 0.699
DM42_2097
annotation not available
    
 0.682
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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