DM42_7234 protein (Burkholderia cepacia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DM42_7234

RND_mfp- efflux transporter, RND family, MFP subunit (342 aa)

Predicted Functional Partners:

DM42_7235

0.903

DM42_7233

0.902

WL94_10225

0.822

DM42_7036

0.809

WL94_27280

0.795

WI67_22855

0.789

WI67_00365

0.786

WL94_05085

0.784

WI67_07455

0.784

WL94_35760

0.782

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM42_7036	DM42_7234	DM42_7036	DM42_7234	efflux_EmrB- drug resistance MFS transporter, drug-H+ antiporter-2 family protein	RND_mfp- efflux transporter, RND family, MFP subunit	0.809
DM42_7233	DM42_7234	DM42_7233	DM42_7234	annotation not available	RND_mfp- efflux transporter, RND family, MFP subunit	0.902
DM42_7233	DM42_7235	DM42_7233	DM42_7235	annotation not available	outer_NodT- efflux transporter, outer membrane factor (OMF) lipo, NodT family protein	0.609
DM42_7234	DM42_7036	DM42_7234	DM42_7036	RND_mfp- efflux transporter, RND family, MFP subunit	efflux_EmrB- drug resistance MFS transporter, drug-H+ antiporter-2 family protein	0.809
DM42_7234	DM42_7233	DM42_7234	DM42_7233	RND_mfp- efflux transporter, RND family, MFP subunit	annotation not available	0.902
DM42_7234	DM42_7235	DM42_7234	DM42_7235	RND_mfp- efflux transporter, RND family, MFP subunit	outer_NodT- efflux transporter, outer membrane factor (OMF) lipo, NodT family protein	0.903
DM42_7234	WI67_00365	DM42_7234	DM42_1732	RND_mfp- efflux transporter, RND family, MFP subunit	efflux_EmrB- drug resistance MFS transporter, drug-H+ antiporter-2 family protein; Belongs to the major facilitator superfamily	0.786
DM42_7234	WI67_07455	DM42_7234	DM42_194	RND_mfp- efflux transporter, RND family, MFP subunit	efflux_EmrB- drug resistance MFS transporter, drug-H+ antiporter-2 family protein; Belongs to the major facilitator superfamily	0.784
DM42_7234	WI67_22855	DM42_7234	DM42_3840	RND_mfp- efflux transporter, RND family, MFP subunit	Disulfide bond formation protein DsbA; efflux_EmrB- drug resistance MFS transporter, drug-H+ antiporter-2 family protein; Belongs to the major facilitator superfamily	0.789
DM42_7234	WL94_05085	DM42_7234	DM42_6189	RND_mfp- efflux transporter, RND family, MFP subunit	Disulfide bond formation protein DsbA; efflux_EmrB- drug resistance MFS transporter, drug-H+ antiporter-2 family protein; Belongs to the major facilitator superfamily	0.784
DM42_7234	WL94_10225	DM42_7234	DM42_4955	RND_mfp- efflux transporter, RND family, MFP subunit	Disulfide bond formation protein DsbA; efflux_EmrB- drug resistance MFS transporter, drug-H+ antiporter-2 family protein; Belongs to the major facilitator superfamily	0.822
DM42_7234	WL94_27280	DM42_7234	DM42_4297	RND_mfp- efflux transporter, RND family, MFP subunit	Disulfide bond formation protein DsbA; efflux_EmrB- drug resistance MFS transporter, drug-H+ antiporter-2 family protein; Belongs to the major facilitator superfamily	0.795
DM42_7234	WL94_35760	DM42_7234	DM42_5653	RND_mfp- efflux transporter, RND family, MFP subunit	efflux_EmrB- drug resistance MFS transporter, drug-H+ antiporter-2 family protein; Belongs to the major facilitator superfamily	0.782
DM42_7235	DM42_7233	DM42_7235	DM42_7233	outer_NodT- efflux transporter, outer membrane factor (OMF) lipo, NodT family protein	annotation not available	0.609
DM42_7235	DM42_7234	DM42_7235	DM42_7234	outer_NodT- efflux transporter, outer membrane factor (OMF) lipo, NodT family protein	RND_mfp- efflux transporter, RND family, MFP subunit	0.903
WI67_00365	DM42_7234	DM42_1732	DM42_7234	efflux_EmrB- drug resistance MFS transporter, drug-H+ antiporter-2 family protein; Belongs to the major facilitator superfamily	RND_mfp- efflux transporter, RND family, MFP subunit	0.786
WI67_07455	DM42_7234	DM42_194	DM42_7234	efflux_EmrB- drug resistance MFS transporter, drug-H+ antiporter-2 family protein; Belongs to the major facilitator superfamily	RND_mfp- efflux transporter, RND family, MFP subunit	0.784
WI67_22855	DM42_7234	DM42_3840	DM42_7234	Disulfide bond formation protein DsbA; efflux_EmrB- drug resistance MFS transporter, drug-H+ antiporter-2 family protein; Belongs to the major facilitator superfamily	RND_mfp- efflux transporter, RND family, MFP subunit	0.789
WL94_05085	DM42_7234	DM42_6189	DM42_7234	Disulfide bond formation protein DsbA; efflux_EmrB- drug resistance MFS transporter, drug-H+ antiporter-2 family protein; Belongs to the major facilitator superfamily	RND_mfp- efflux transporter, RND family, MFP subunit	0.784
WL94_10225	DM42_7234	DM42_4955	DM42_7234	Disulfide bond formation protein DsbA; efflux_EmrB- drug resistance MFS transporter, drug-H+ antiporter-2 family protein; Belongs to the major facilitator superfamily	RND_mfp- efflux transporter, RND family, MFP subunit	0.822

page 1 of 2

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2019

Credits

Access

Info

About