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STRINGSTRING
ligJ protein (Burkholderia cepacia) - STRING interaction network
"ligJ" - annotation not available in Burkholderia cepacia
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ligJannotation not available (341 aa)    
Predicted Functional Partners:
ligK
ligK_PcmE- 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase (227 aa)
 
   
  0.997
ligB
annotation not available (434 aa)
 
          0.910
DM42_7332
annotation not available (235 aa)
 
          0.889
DM42_5393
annotation not available (310 aa)
 
     
  0.766
DM42_6235
annotation not available (285 aa)
 
     
  0.765
DM42_7335
annotation not available (449 aa)
   
        0.671
DM42_7338
annotation not available (416 aa)
 
          0.661
DM42_6407
annotation not available (296 aa)
 
     
  0.615
DM42_6419
annotation not available (303 aa)
 
     
  0.604
pobA
Pbenz_hydroxyl- 4-hydroxybenzoate 3-monooxygenase (410 aa)
 
   
  0.585
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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