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DM42_7346 protein (Burkholderia cepacia) - STRING interaction network
"DM42_7346" - vgr_GE: Rhs element Vgr family protein in Burkholderia cepacia
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_7346vgr_GE- Rhs element Vgr family protein (999 aa)    
Predicted Functional Partners:
DM42_7347
Conserved hypothetical protein (588 aa)
 
   
  0.908
DM42_7342
Rhs_assc_core- RHS repeat-associated core domain protein (1399 aa)
   
  0.906
DM42_7345
annotation not available (289 aa)
 
          0.903
DM42_1366
Type VI secretion protein (171 aa)
 
   
  0.845
DM42_7343
Conserved hypothetical protein (152 aa)
 
   
  0.844
WI67_02115
Type VI secretion protein (448 aa)
 
   
  0.843
WI67_02135
EvpB family type VI secretion protein (496 aa)
 
     
  0.842
WL94_16170
Type VI secretion protein (366 aa)
 
   
  0.832
WL94_16125
IV_VI_DotU- type IV/VI secretion system , DotU family domain protein (260 aa)
 
   
  0.824
WI67_02180
annotation not available (1314 aa)
 
   
  0.822
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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