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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pmbAannotation not available (456 aa)    
Predicted Functional Partners:
tldD
annotation not available
 
 
0.814
WI67_05230
UPF0307 protein WI67_05230; Belongs to the UPF0307 family
  
    0.765
WL94_16795
Molyb_syn: molybdenum cofactor synthesis domain protein
       0.728
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth
  
 
 
 0.506
rpoH
rpoH_proteo: alternative sigma factor RpoH
   
 
 0.446
rpoS
rpoS_proteo: RNA polymerase sigma factor RpoS
    
 
 0.435
DM42_3834
sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein
    
 
 0.435
DM42_5617
sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein
    
 
 0.435
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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