STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
Node Content
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABF62815.1
annotation not available (355 aa)
Predicted Functional Partners:
ABF63820.1
annotation not available
0.891
aprE
annotation not available
0.688
ABF64221.1
annotation not available
0.681
ABF65210.1
annotation not available
0.647
ABF63261.1
annotation not available
0.633
ABF61966.1
annotation not available
0.605
ABF62816.1
annotation not available
0.604
ABF65211.1
annotation not available
0.591
rpsO
30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA
0.573
ABF63262.1
annotation not available
0.523
Your Current Organism:
Ruegeria sp. TM1040
NCBI taxonomy Id: 292414 Other names: R. sp. TM1040, Ruegeria sp. TM1040, Silicibacter sp. TM1040
a tab-delimited file describing the names, domains and annotated functions of the network proteins
Browse interactions in tabular form:
node1
node2
node1 accession
node2 accession
node1 annotation
node2 annotation
score
ABF61966.1
ABF62815.1
TM1040_3835
TM1040_0082
annotation not available
annotation not available
0.605
ABF61966.1
ABF63261.1
TM1040_3835
TM1040_0528
annotation not available
annotation not available
0.713
ABF61966.1
ABF63820.1
TM1040_3835
TM1040_1087
annotation not available
annotation not available
0.656
ABF61966.1
ABF65210.1
TM1040_3835
TM1040_2478
annotation not available
annotation not available
0.815
ABF61966.1
aprE
TM1040_3835
TM1040_3834
annotation not available
annotation not available
0.933
ABF62815.1
ABF61966.1
TM1040_0082
TM1040_3835
annotation not available
annotation not available
0.605
ABF62815.1
ABF62816.1
TM1040_0082
TM1040_0083
annotation not available
annotation not available
0.604
ABF62815.1
ABF63261.1
TM1040_0082
TM1040_0528
annotation not available
annotation not available
0.633
ABF62815.1
ABF63262.1
TM1040_0082
TM1040_0529
annotation not available
annotation not available
0.523
ABF62815.1
ABF63820.1
TM1040_0082
TM1040_1087
annotation not available
annotation not available
0.891
ABF62815.1
ABF64221.1
TM1040_0082
TM1040_1488
annotation not available
annotation not available
0.681
ABF62815.1
ABF65210.1
TM1040_0082
TM1040_2478
annotation not available
annotation not available
0.647
ABF62815.1
ABF65211.1
TM1040_0082
TM1040_2479
annotation not available
annotation not available
0.591
ABF62815.1
aprE
TM1040_0082
TM1040_3834
annotation not available
annotation not available
0.688
ABF62815.1
rpsO
TM1040_0082
TM1040_0081
annotation not available
30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA
0.573
ABF62816.1
ABF62815.1
TM1040_0083
TM1040_0082
annotation not available
annotation not available
0.604
ABF63261.1
ABF61966.1
TM1040_0528
TM1040_3835
annotation not available
annotation not available
0.713
ABF63261.1
ABF62815.1
TM1040_0528
TM1040_0082
annotation not available
annotation not available
0.633
ABF63261.1
ABF63262.1
TM1040_0528
TM1040_0529
annotation not available
annotation not available
0.987
ABF63261.1
ABF63820.1
TM1040_0528
TM1040_1087
annotation not available
annotation not available
0.637
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Network Stats
Network Stats analysis is still ongoing, please wait ...
Functional enrichments in your networkNote: some enrichments may be expected here (why?) explain columns
Enrichment analysis is still ongoing, please wait ...
Statistical background
For the above enrichment analysis, the following statistical background is assumed: