STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABF62871.1Hypothetical protein. (214 aa)    
Predicted Functional Partners:
ABF62873.1
Anti-sigma-factor antagonist.
 
 
 0.984
ABF62874.1
Anti-sigma-factor antagonist.
 
 
 0.984
ABF62872.1
Putative anti-sigma regulatory factor serine/threonine protein kinase.
 
     0.951
ABF63696.1
Anti-sigma-factor antagonist.
 
 
 0.933
ABF62870.1
Histidine kinase.
 
   
 0.861
rsbU
Phosphoserine phosphatase rsbU.
  
 
 0.856
ABF62869.1
Response regulator receiver protein.
  
  
 0.820
ABF62799.1
Anti-sigma-factor antagonist.
 
 
 0.762
fliG
Flagellar motor switch protein fliG.
   
    0.691
ABF64902.1
Hypothetical protein.
   
    0.691
Your Current Organism:
Ruegeria sp. TM1040
NCBI taxonomy Id: 292414
Other names: R. sp. TM1040, Silicibacter sp. TM1040
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.