Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABF63117.1 | ureB | TM1040_0384 | TM1040_0386 | Hypothetical protein. | Urease beta subunit; Belongs to the urease beta subunit family. | 0.481 |
ABF63117.1 | ureC | TM1040_0384 | TM1040_0385 | Hypothetical protein. | Urease. Metallo peptidase. MEROPS family M38; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family. | 0.704 |
ABF63117.1 | ureE | TM1040_0384 | TM1040_0382 | Hypothetical protein. | UreE urease accessory-like protein; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family. | 0.489 |
ABF63117.1 | ureF | TM1040_0384 | TM1040_0381 | Hypothetical protein. | Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | 0.481 |
ABF63117.1 | ureG | TM1040_0384 | TM1040_0380 | Hypothetical protein. | Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG. | 0.457 |
ABF63898.1 | ureA | TM1040_1165 | TM1040_0387 | Arginase; Belongs to the arginase family. | Urease gamma subunit; Belongs to the urease gamma subunit family. | 0.904 |
ABF63898.1 | ureB | TM1040_1165 | TM1040_0386 | Arginase; Belongs to the arginase family. | Urease beta subunit; Belongs to the urease beta subunit family. | 0.903 |
ABF63898.1 | ureC | TM1040_1165 | TM1040_0385 | Arginase; Belongs to the arginase family. | Urease. Metallo peptidase. MEROPS family M38; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family. | 0.903 |
ABF64888.1 | ABF65132.1 | TM1040_2156 | TM1040_2400 | Diguanylate cyclase/phosphodiesterase. | Non-ribosomal peptide synthase. | 0.639 |
ABF64888.1 | ureB | TM1040_2156 | TM1040_0386 | Diguanylate cyclase/phosphodiesterase. | Urease beta subunit; Belongs to the urease beta subunit family. | 0.509 |
ABF64888.1 | ureE | TM1040_2156 | TM1040_0382 | Diguanylate cyclase/phosphodiesterase. | UreE urease accessory-like protein; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family. | 0.468 |
ABF65132.1 | ABF64888.1 | TM1040_2400 | TM1040_2156 | Non-ribosomal peptide synthase. | Diguanylate cyclase/phosphodiesterase. | 0.639 |
ABF65132.1 | ureB | TM1040_2400 | TM1040_0386 | Non-ribosomal peptide synthase. | Urease beta subunit; Belongs to the urease beta subunit family. | 0.404 |
ureA | ABF63898.1 | TM1040_0387 | TM1040_1165 | Urease gamma subunit; Belongs to the urease gamma subunit family. | Arginase; Belongs to the arginase family. | 0.904 |
ureA | ureB | TM1040_0387 | TM1040_0386 | Urease gamma subunit; Belongs to the urease gamma subunit family. | Urease beta subunit; Belongs to the urease beta subunit family. | 0.999 |
ureA | ureC | TM1040_0387 | TM1040_0385 | Urease gamma subunit; Belongs to the urease gamma subunit family. | Urease. Metallo peptidase. MEROPS family M38; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family. | 0.999 |
ureA | ureD | TM1040_0387 | TM1040_0388 | Urease gamma subunit; Belongs to the urease gamma subunit family. | Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | 0.989 |
ureA | ureE | TM1040_0387 | TM1040_0382 | Urease gamma subunit; Belongs to the urease gamma subunit family. | UreE urease accessory-like protein; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family. | 0.971 |
ureA | ureF | TM1040_0387 | TM1040_0381 | Urease gamma subunit; Belongs to the urease gamma subunit family. | Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | 0.983 |
ureA | ureG | TM1040_0387 | TM1040_0380 | Urease gamma subunit; Belongs to the urease gamma subunit family. | Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG. | 0.977 |
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