Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABF63898.1 | ureA | TM1040_1165 | TM1040_0387 | Arginase; Belongs to the arginase family. | Urease gamma subunit; Belongs to the urease gamma subunit family. | 0.904 |
ABF63898.1 | ureB | TM1040_1165 | TM1040_0386 | Arginase; Belongs to the arginase family. | Urease beta subunit; Belongs to the urease beta subunit family. | 0.903 |
ABF63898.1 | ureC | TM1040_1165 | TM1040_0385 | Arginase; Belongs to the arginase family. | Urease. Metallo peptidase. MEROPS family M38; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family. | 0.903 |
ABF64594.1 | ureA | TM1040_1861 | TM1040_0387 | GCN5-related N-acetyltransferase. | Urease gamma subunit; Belongs to the urease gamma subunit family. | 0.547 |
ABF64594.1 | ureD | TM1040_1861 | TM1040_0388 | GCN5-related N-acetyltransferase. | Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | 0.546 |
ABF65555.1 | hemE | TM1040_2823 | TM1040_2528 | Glutamate synthase (NADPH) large subunit. | Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. | 0.813 |
ABF65555.1 | ureA | TM1040_2823 | TM1040_0387 | Glutamate synthase (NADPH) large subunit. | Urease gamma subunit; Belongs to the urease gamma subunit family. | 0.505 |
ABF65555.1 | ureB | TM1040_2823 | TM1040_0386 | Glutamate synthase (NADPH) large subunit. | Urease beta subunit; Belongs to the urease beta subunit family. | 0.402 |
ABF65555.1 | ureC | TM1040_2823 | TM1040_0385 | Glutamate synthase (NADPH) large subunit. | Urease. Metallo peptidase. MEROPS family M38; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family. | 0.489 |
ABF65555.1 | ureD | TM1040_2823 | TM1040_0388 | Glutamate synthase (NADPH) large subunit. | Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | 0.611 |
ABF65555.1 | ureE | TM1040_2823 | TM1040_0382 | Glutamate synthase (NADPH) large subunit. | UreE urease accessory-like protein; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family. | 0.657 |
hemE | ABF65555.1 | TM1040_2528 | TM1040_2823 | Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. | Glutamate synthase (NADPH) large subunit. | 0.813 |
hemE | ureA | TM1040_2528 | TM1040_0387 | Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. | Urease gamma subunit; Belongs to the urease gamma subunit family. | 0.536 |
ureA | ABF63898.1 | TM1040_0387 | TM1040_1165 | Urease gamma subunit; Belongs to the urease gamma subunit family. | Arginase; Belongs to the arginase family. | 0.904 |
ureA | ABF64594.1 | TM1040_0387 | TM1040_1861 | Urease gamma subunit; Belongs to the urease gamma subunit family. | GCN5-related N-acetyltransferase. | 0.547 |
ureA | ABF65555.1 | TM1040_0387 | TM1040_2823 | Urease gamma subunit; Belongs to the urease gamma subunit family. | Glutamate synthase (NADPH) large subunit. | 0.505 |
ureA | hemE | TM1040_0387 | TM1040_2528 | Urease gamma subunit; Belongs to the urease gamma subunit family. | Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. | 0.536 |
ureA | ureB | TM1040_0387 | TM1040_0386 | Urease gamma subunit; Belongs to the urease gamma subunit family. | Urease beta subunit; Belongs to the urease beta subunit family. | 0.999 |
ureA | ureC | TM1040_0387 | TM1040_0385 | Urease gamma subunit; Belongs to the urease gamma subunit family. | Urease. Metallo peptidase. MEROPS family M38; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family. | 0.999 |
ureA | ureD | TM1040_0387 | TM1040_0388 | Urease gamma subunit; Belongs to the urease gamma subunit family. | Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | 0.989 |
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