STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABF63159.1annotation not available (492 aa)    
Predicted Functional Partners:
ABF63162.1
annotation not available
 
    0.941
ABF63104.1
annotation not available
  
  0.930
ABF63163.1
annotation not available
 
  
 0.926
ABF63160.1
annotation not available
  
 0.924
xylA
annotation not available
    
 0.918
ABF63161.1
annotation not available
  
 0.897
ABF63164.1
annotation not available
 
  
 0.849
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate
  
 0.680
uxaC
annotation not available
  
 0.641
xylB
annotation not available
  
 0.602
Your Current Organism:
Ruegeria sp. TM1040
NCBI taxonomy Id: 292414
Other names: R. sp. TM1040, Ruegeria sp. TM1040, Silicibacter sp. TM1040
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