STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABF63212.1annotation not available (200 aa)    
Predicted Functional Partners:
ABF65364.1
annotation not available
  
     0.727
ABF64183.1
annotation not available
  
     0.703
ABF64235.1
annotation not available
  
     0.700
ABF64046.1
annotation not available
  
     0.696
rpsU
annotation not available
  
     0.630
ABF65577.1
annotation not available
  
     0.622
ABF64212.1
annotation not available
  
     0.602
bamD
Outer membrane protein assembly factor BamD; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
  
     0.591
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination
  
     0.591
ABF63213.1
annotation not available
       0.590
Your Current Organism:
Ruegeria sp. TM1040
NCBI taxonomy Id: 292414
Other names: R. sp. TM1040, Ruegeria sp. TM1040, Silicibacter sp. TM1040
Server load: low (3%) [HD]