Co-purification, co-crystallization, Yeast2Hybrid, Genetic Interactions, etc ... as imported from primary sources.
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Fusion
Genes that are sometimes fused into single open reading frames.
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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
Node Content
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABF63376.1
annotation not available (328 aa)
Predicted Functional Partners:
ABF63375.1
annotation not available
0.984
ABF61906.1
annotation not available
0.907
ABF64951.1
Hydrogenobyrinate a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of hydrogenobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family
0.906
ABF64942.1
annotation not available
0.801
ABF63378.1
annotation not available
0.588
ABF63379.1
annotation not available
0.530
ABF65381.1
annotation not available
0.491
ABF65048.1
annotation not available
0.475
ABF63374.1
annotation not available
0.460
ABF63377.1
annotation not available
0.459
Your Current Organism:
Ruegeria sp. TM1040
NCBI taxonomy Id: 292414 Other names: R. sp. TM1040, Ruegeria sp. TM1040, Silicibacter sp. TM1040
a tab-delimited file describing the names, domains and annotated functions of the network proteins
Browse interactions in tabular form:
node1
node2
node1 accession
node2 accession
node1 annotation
node2 annotation
score
ABF61906.1
ABF63375.1
TM1040_3773
TM1040_0642
annotation not available
annotation not available
0.907
ABF61906.1
ABF63376.1
TM1040_3773
TM1040_0643
annotation not available
annotation not available
0.907
ABF61906.1
ABF64942.1
TM1040_3773
TM1040_2210
annotation not available
annotation not available
0.900
ABF63374.1
ABF63375.1
TM1040_0641
TM1040_0642
annotation not available
annotation not available
0.550
ABF63374.1
ABF63376.1
TM1040_0641
TM1040_0643
annotation not available
annotation not available
0.460
ABF63375.1
ABF61906.1
TM1040_0642
TM1040_3773
annotation not available
annotation not available
0.907
ABF63375.1
ABF63374.1
TM1040_0642
TM1040_0641
annotation not available
annotation not available
0.550
ABF63375.1
ABF63376.1
TM1040_0642
TM1040_0643
annotation not available
annotation not available
0.984
ABF63375.1
ABF63378.1
TM1040_0642
TM1040_0645
annotation not available
annotation not available
0.763
ABF63375.1
ABF63379.1
TM1040_0642
TM1040_0646
annotation not available
annotation not available
0.473
ABF63375.1
ABF64942.1
TM1040_0642
TM1040_2210
annotation not available
annotation not available
0.800
ABF63375.1
ABF64951.1
TM1040_0642
TM1040_2219
annotation not available
Hydrogenobyrinate a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of hydrogenobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family
0.900
ABF63375.1
ABF65048.1
TM1040_0642
TM1040_2316
annotation not available
annotation not available
0.545
ABF63375.1
ABF65381.1
TM1040_0642
TM1040_2649
annotation not available
annotation not available
0.680
ABF63376.1
ABF61906.1
TM1040_0643
TM1040_3773
annotation not available
annotation not available
0.907
ABF63376.1
ABF63374.1
TM1040_0643
TM1040_0641
annotation not available
annotation not available
0.460
ABF63376.1
ABF63375.1
TM1040_0643
TM1040_0642
annotation not available
annotation not available
0.984
ABF63376.1
ABF63377.1
TM1040_0643
TM1040_0644
annotation not available
annotation not available
0.459
ABF63376.1
ABF63378.1
TM1040_0643
TM1040_0645
annotation not available
annotation not available
0.588
ABF63376.1
ABF63379.1
TM1040_0643
TM1040_0646
annotation not available
annotation not available
0.530
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Network Stats
Network Stats analysis is still ongoing, please wait ...
Functional enrichments in your networkNote: some enrichments may be expected here (why?) explain columns
Enrichment analysis is still ongoing, please wait ...
Statistical background
For the above enrichment analysis, the following statistical background is assumed: