Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABF63679.1 | ABF63681.1 | TM1040_0946 | TM1040_0948 | PpiC-type peptidyl-prolyl cis-trans isomerase. | Permease YjgP/YjgQ. | 0.891 |
ABF63679.1 | ABF63682.1 | TM1040_0946 | TM1040_0949 | PpiC-type peptidyl-prolyl cis-trans isomerase. | Permease YjgP/YjgQ. | 0.891 |
ABF63679.1 | ABF63684.1 | TM1040_0946 | TM1040_0951 | PpiC-type peptidyl-prolyl cis-trans isomerase. | DNA polymerase III chi subunit HolC. | 0.769 |
ABF63679.1 | lptD | TM1040_0946 | TM1040_0947 | PpiC-type peptidyl-prolyl cis-trans isomerase. | Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family. | 0.962 |
ABF63679.1 | pdxA | TM1040_0946 | TM1040_0945 | PpiC-type peptidyl-prolyl cis-trans isomerase. | 4-hydroxythreonine-4-phosphate dehydrogenase; Catalyzes the NAD(P)-dependent oxidation of 4-(phosphooxy)-L- threonine (HTP) into 2-amino-3-oxo-4-(phosphooxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP). | 0.894 |
ABF63679.1 | pepA | TM1040_0946 | TM1040_0950 | PpiC-type peptidyl-prolyl cis-trans isomerase. | Leucyl aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides. | 0.714 |
ABF63679.1 | rsmA | TM1040_0946 | TM1040_0944 | PpiC-type peptidyl-prolyl cis-trans isomerase. | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.807 |
ABF63681.1 | ABF63679.1 | TM1040_0948 | TM1040_0946 | Permease YjgP/YjgQ. | PpiC-type peptidyl-prolyl cis-trans isomerase. | 0.891 |
ABF63681.1 | ABF63682.1 | TM1040_0948 | TM1040_0949 | Permease YjgP/YjgQ. | Permease YjgP/YjgQ. | 0.999 |
ABF63681.1 | ABF63684.1 | TM1040_0948 | TM1040_0951 | Permease YjgP/YjgQ. | DNA polymerase III chi subunit HolC. | 0.769 |
ABF63681.1 | lptD | TM1040_0948 | TM1040_0947 | Permease YjgP/YjgQ. | Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family. | 0.967 |
ABF63681.1 | pdxA | TM1040_0948 | TM1040_0945 | Permease YjgP/YjgQ. | 4-hydroxythreonine-4-phosphate dehydrogenase; Catalyzes the NAD(P)-dependent oxidation of 4-(phosphooxy)-L- threonine (HTP) into 2-amino-3-oxo-4-(phosphooxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP). | 0.868 |
ABF63681.1 | pepA | TM1040_0948 | TM1040_0950 | Permease YjgP/YjgQ. | Leucyl aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides. | 0.697 |
ABF63681.1 | rsmA | TM1040_0948 | TM1040_0944 | Permease YjgP/YjgQ. | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.706 |
ABF63682.1 | ABF63679.1 | TM1040_0949 | TM1040_0946 | Permease YjgP/YjgQ. | PpiC-type peptidyl-prolyl cis-trans isomerase. | 0.891 |
ABF63682.1 | ABF63681.1 | TM1040_0949 | TM1040_0948 | Permease YjgP/YjgQ. | Permease YjgP/YjgQ. | 0.999 |
ABF63682.1 | ABF63684.1 | TM1040_0949 | TM1040_0951 | Permease YjgP/YjgQ. | DNA polymerase III chi subunit HolC. | 0.745 |
ABF63682.1 | lptD | TM1040_0949 | TM1040_0947 | Permease YjgP/YjgQ. | Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family. | 0.963 |
ABF63682.1 | pdxA | TM1040_0949 | TM1040_0945 | Permease YjgP/YjgQ. | 4-hydroxythreonine-4-phosphate dehydrogenase; Catalyzes the NAD(P)-dependent oxidation of 4-(phosphooxy)-L- threonine (HTP) into 2-amino-3-oxo-4-(phosphooxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP). | 0.868 |
ABF63682.1 | pepA | TM1040_0949 | TM1040_0950 | Permease YjgP/YjgQ. | Leucyl aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides. | 0.697 |
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