STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABF63974.1annotation not available (347 aa)    
Predicted Functional Partners:
ABF64128.1
annotation not available
  
 
 0.993
ABF63973.1
annotation not available
 
  
 0.991
ABF64191.1
annotation not available
   
 0.928
ABF63975.1
annotation not available
 
  
 0.878
ABF65366.1
annotation not available
  
 0.852
ABF63976.1
annotation not available
     
 0.775
mnmA
tRNA-specific 2-thiouridylase MnmA; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34
 
  
 0.775
ABF64593.1
annotation not available
  
 
 0.747
ABF63978.1
annotation not available
  
  
 0.706
ABF64681.1
annotation not available
  
 
 0.698
Your Current Organism:
Ruegeria sp. TM1040
NCBI taxonomy Id: 292414
Other names: R. sp. TM1040, Ruegeria sp. TM1040, Silicibacter sp. TM1040
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