STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mcpPMethyl-accepting chemotaxis sensory transducer. (705 aa)    
Predicted Functional Partners:
cheR3
MCP methyltransferase, CheR-type.
 
 
 0.904
cheR5
MCP methyltransferase, CheR-type.
 
 
 0.900
cheR4
Signal transduction histidine kinase with CheB and CheR activity.
 
 
 0.849
ABF63764.1
Response regulator receiver protein.
 
 
 0.612
ABF62869.1
Response regulator receiver protein.
 
 
 0.586
aer
Aerotaxis receptor.
    0.565
ABF64730.1
Response regulator receiver protein.
 
   0.553
fliG
Flagellar motor switch protein fliG.
 
  
 0.541
fliI
Flagellum-specific ATP synthase.
 
   0.530
hik-2
PAS/PAC sensor hybrid histidine kinase.
 
 
 0.528
Your Current Organism:
Ruegeria sp. TM1040
NCBI taxonomy Id: 292414
Other names: R. sp. TM1040, Silicibacter sp. TM1040
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.