STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mcpFMethyl-accepting chemotaxis sensory transducer. (788 aa)    
Predicted Functional Partners:
cheR3
MCP methyltransferase, CheR-type.
 
 
 0.912
cheR5
MCP methyltransferase, CheR-type.
 
 
 0.909
cheR4
Signal transduction histidine kinase with CheB and CheR activity.
 
 
 0.857
ABF63764.1
Response regulator receiver protein.
 
 
 0.624
ABF62869.1
Response regulator receiver protein.
 
 
 0.613
ABF64730.1
Response regulator receiver protein.
 
   0.596
aer
Aerotaxis receptor.
    0.578
fliG
Flagellar motor switch protein fliG.
 
  
 0.554
arcB
Multi-sensor hybrid histidine kinase.
 
 
 0.522
hik-2
PAS/PAC sensor hybrid histidine kinase.
 
 
 0.521
Your Current Organism:
Ruegeria sp. TM1040
NCBI taxonomy Id: 292414
Other names: R. sp. TM1040, Silicibacter sp. TM1040
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.