Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABF62845.1 | ABF64169.1 | TM1040_0112 | TM1040_1436 | PAS/PAC sensor hybrid histidine kinase. | Enoyl-CoA hydratase/isomerase. | 0.765 |
ABF62845.1 | ABF65132.1 | TM1040_0112 | TM1040_2400 | PAS/PAC sensor hybrid histidine kinase. | Non-ribosomal peptide synthase. | 0.795 |
ABF62845.1 | ABF65368.1 | TM1040_0112 | TM1040_2636 | PAS/PAC sensor hybrid histidine kinase. | Enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.765 |
ABF62845.1 | arcB | TM1040_0112 | TM1040_0342 | PAS/PAC sensor hybrid histidine kinase. | Multi-sensor hybrid histidine kinase. | 0.968 |
ABF62845.1 | hik | TM1040_0112 | TM1040_0221 | PAS/PAC sensor hybrid histidine kinase. | Histidine kinase. | 0.770 |
ABF62845.1 | hik-2 | TM1040_0112 | TM1040_0962 | PAS/PAC sensor hybrid histidine kinase. | PAS/PAC sensor hybrid histidine kinase. | 0.955 |
ABF62845.1 | pleC | TM1040_0112 | TM1040_2774 | PAS/PAC sensor hybrid histidine kinase. | Histidine kinase. | 0.967 |
ABF64169.1 | ABF62845.1 | TM1040_1436 | TM1040_0112 | Enoyl-CoA hydratase/isomerase. | PAS/PAC sensor hybrid histidine kinase. | 0.765 |
ABF64169.1 | ABF65132.1 | TM1040_1436 | TM1040_2400 | Enoyl-CoA hydratase/isomerase. | Non-ribosomal peptide synthase. | 0.675 |
ABF64169.1 | ABF65156.1 | TM1040_1436 | TM1040_2424 | Enoyl-CoA hydratase/isomerase. | 3-hydroxyacyl-CoA dehydrogenase. | 0.541 |
ABF64169.1 | ABF65368.1 | TM1040_1436 | TM1040_2636 | Enoyl-CoA hydratase/isomerase. | Enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.766 |
ABF64169.1 | arcB | TM1040_1436 | TM1040_0342 | Enoyl-CoA hydratase/isomerase. | Multi-sensor hybrid histidine kinase. | 0.771 |
ABF64169.1 | hik | TM1040_1436 | TM1040_0221 | Enoyl-CoA hydratase/isomerase. | Histidine kinase. | 0.765 |
ABF64169.1 | hik-2 | TM1040_1436 | TM1040_0962 | Enoyl-CoA hydratase/isomerase. | PAS/PAC sensor hybrid histidine kinase. | 0.771 |
ABF64169.1 | pleC | TM1040_1436 | TM1040_2774 | Enoyl-CoA hydratase/isomerase. | Histidine kinase. | 0.772 |
ABF65132.1 | ABF62845.1 | TM1040_2400 | TM1040_0112 | Non-ribosomal peptide synthase. | PAS/PAC sensor hybrid histidine kinase. | 0.795 |
ABF65132.1 | ABF64169.1 | TM1040_2400 | TM1040_1436 | Non-ribosomal peptide synthase. | Enoyl-CoA hydratase/isomerase. | 0.675 |
ABF65132.1 | ABF65156.1 | TM1040_2400 | TM1040_2424 | Non-ribosomal peptide synthase. | 3-hydroxyacyl-CoA dehydrogenase. | 0.558 |
ABF65132.1 | ABF65368.1 | TM1040_2400 | TM1040_2636 | Non-ribosomal peptide synthase. | Enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.675 |
ABF65132.1 | ABF65369.1 | TM1040_2400 | TM1040_2637 | Non-ribosomal peptide synthase. | Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.686 |
page 1 of 4