STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABF65482.1annotation not available (347 aa)    
Predicted Functional Partners:
ABF65481.1
annotation not available
  
 0.941
ABF65480.1
annotation not available
 
  
 0.922
ABF61998.1
annotation not available
  
 0.824
ABF64544.1
annotation not available
  
 0.817
ABF64322.1
annotation not available
  
 0.810
ABF64799.1
annotation not available
  
 0.803
ABF61999.1
annotation not available
 
  
 0.750
ABF63091.1
annotation not available
  
 0.717
ABF65483.1
Microcystinase C; Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC)
 
     0.705
ABF65484.1
annotation not available
 
     0.695
Your Current Organism:
Ruegeria sp. TM1040
NCBI taxonomy Id: 292414
Other names: R. sp. TM1040, Ruegeria sp. TM1040, Silicibacter sp. TM1040
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