STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbd_0244Probable outer membrane protein. (331 aa)    
Predicted Functional Partners:
Tbd_0243
Conserved hypothetical protein.
 
 
 0.947
tolB
Probable tolB-related transport protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.660
Tbd_2468
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
  
   0.567
Tbd_0794
Putative outer membrane protein; Belongs to the skp family.
  
 
 0.526
Tbd_0249
ABC-type transport system periplasmic component.
   
   0.524
Tbd_0250
Putative lipoprotein.
   
   0.522
Tbd_1666
Peptidoglycan-binding protein LysM.
 
 
 
 0.503
Tbd_0247
ABC transport system permease protein.
     
 0.495
Tbd_0245
Conserved hypothetical protein.
       0.494
metAS
Homoserine O-succinyltransferase; Transfers a succinyl group from succinyl-CoA to L-homoserine, forming succinyl-L-homoserine. In vitro, can also use glutaryl-CoA as acyl donor; Belongs to the MetA family.
       0.494
Your Current Organism:
Thiobacillus denitrificans ATCC 25259
NCBI taxonomy Id: 292415
Other names: T. denitrificans ATCC 25259, Thiobacillus denitrificans str. ATCC 25259, Thiobacillus denitrificans strain ATCC 25259
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.