STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbd_0288Conserved hypothetical protein. (354 aa)    
Predicted Functional Partners:
Tbd_0287
Polysaccharide deacetylase.
 
   
 0.955
Tbd_0290
Conserved hypothetical protein.
 
     0.954
Tbd_0289
Glycosyl transferases group 1.
 
     0.953
Tbd_0291
Glycosyl transferase, group 1.
 
     0.951
Tbd_0297
Conserved hypothetical membrane protein.
 
     0.937
Tbd_0293
Glycosyl transferase, group 1.
 
     0.925
Tbd_0294
Glycosyl transferase, group 1.
 
     0.924
Tbd_0285
ATPase.
 
     0.923
Tbd_0295
Possible capK protein.
 
     0.921
Tbd_0282
Polysaccharide chain length determinant protein.
 
     0.903
Your Current Organism:
Thiobacillus denitrificans ATCC 25259
NCBI taxonomy Id: 292415
Other names: T. denitrificans ATCC 25259, Thiobacillus denitrificans str. ATCC 25259, Thiobacillus denitrificans strain ATCC 25259
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.