STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbd_0331Hypothetical protein. (82 aa)    
Predicted Functional Partners:
Tbd_0333
Probable transmembrane protein.
 
     0.856
Tbd_0334
Putative cytochrome aa3 oxidase assembly protein,related to CtaA.
 
    0.817
Tbd_0332
SURF1 family protein.
 
     0.776
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
     0.727
Tbd_0337
Putative SCO1/SenC family protein.
       0.491
Tbd_1604
Flagellar protein FliJ.
  
     0.432
Tbd_0830
Conserved hypothetical protein.
  
     0.424
Tbd_0336
Protein of unknown function UPF0074.
       0.411
Tbd_2027
Cytochrome c, class IC.
  
     0.408
Your Current Organism:
Thiobacillus denitrificans ATCC 25259
NCBI taxonomy Id: 292415
Other names: T. denitrificans ATCC 25259, Thiobacillus denitrificans str. ATCC 25259, Thiobacillus denitrificans strain ATCC 25259
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.