Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Tbd_0153 | Tbd_2291 | Tbd_0153 | Tbd_2291 | ABC transport system periplasmic component. | ABC phosphonate transport system ATPase. | 0.479 |
Tbd_0153 | Tbd_2292 | Tbd_0153 | Tbd_2292 | ABC transport system periplasmic component. | ABC phosphonate transport system ATPase. | 0.462 |
Tbd_0153 | Tbd_2293 | Tbd_0153 | Tbd_2293 | ABC transport system periplasmic component. | Phosphonate metabolism protein PhnJ; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family. | 0.672 |
Tbd_0153 | Tbd_2294 | Tbd_0153 | Tbd_2294 | ABC transport system periplasmic component. | Phosphonate metabolism protein. | 0.479 |
Tbd_0153 | Tbd_2295 | Tbd_0153 | Tbd_2295 | ABC transport system periplasmic component. | Putative PhnH protein, phosphonate metabolism, function unknown. | 0.515 |
Tbd_0153 | Tbd_2296 | Tbd_0153 | Tbd_2296 | ABC transport system periplasmic component. | Hypothetical protein. | 0.469 |
Tbd_0153 | Tbd_2297 | Tbd_0153 | Tbd_2297 | ABC transport system periplasmic component. | ABC phosphonate permease. | 0.893 |
Tbd_0153 | Tbd_2298 | Tbd_0153 | Tbd_2298 | ABC transport system periplasmic component. | ABC phosphonate permease. | 0.888 |
Tbd_0153 | Tbd_2300 | Tbd_0153 | Tbd_2300 | ABC transport system periplasmic component. | Phosphonate-binding periplasmic protein. | 0.926 |
Tbd_0153 | phnC | Tbd_0153 | Tbd_2299 | ABC transport system periplasmic component. | ABC phosphate/phosphonate transport system ATPase; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family. | 0.950 |
Tbd_2291 | Tbd_0153 | Tbd_2291 | Tbd_0153 | ABC phosphonate transport system ATPase. | ABC transport system periplasmic component. | 0.479 |
Tbd_2291 | Tbd_2292 | Tbd_2291 | Tbd_2292 | ABC phosphonate transport system ATPase. | ABC phosphonate transport system ATPase. | 0.999 |
Tbd_2291 | Tbd_2293 | Tbd_2291 | Tbd_2293 | ABC phosphonate transport system ATPase. | Phosphonate metabolism protein PhnJ; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family. | 0.998 |
Tbd_2291 | Tbd_2294 | Tbd_2291 | Tbd_2294 | ABC phosphonate transport system ATPase. | Phosphonate metabolism protein. | 0.999 |
Tbd_2291 | Tbd_2295 | Tbd_2291 | Tbd_2295 | ABC phosphonate transport system ATPase. | Putative PhnH protein, phosphonate metabolism, function unknown. | 0.999 |
Tbd_2291 | Tbd_2296 | Tbd_2291 | Tbd_2296 | ABC phosphonate transport system ATPase. | Hypothetical protein. | 0.998 |
Tbd_2291 | Tbd_2297 | Tbd_2291 | Tbd_2297 | ABC phosphonate transport system ATPase. | ABC phosphonate permease. | 0.877 |
Tbd_2291 | Tbd_2298 | Tbd_2291 | Tbd_2298 | ABC phosphonate transport system ATPase. | ABC phosphonate permease. | 0.860 |
Tbd_2291 | Tbd_2300 | Tbd_2291 | Tbd_2300 | ABC phosphonate transport system ATPase. | Phosphonate-binding periplasmic protein. | 0.953 |
Tbd_2291 | phnC | Tbd_2291 | Tbd_2299 | ABC phosphonate transport system ATPase. | ABC phosphate/phosphonate transport system ATPase; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family. | 0.972 |
page 1 of 6