Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
STH1113 | STH1795 | STH1113 | STH1795 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.439 |
STH1113 | STH1797 | STH1113 | STH1797 | Conserved hypothetical protein. | ATP-dependent DNA ligase. | 0.425 |
STH1113 | STH1799 | STH1113 | STH1799 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.477 |
STH1113 | ku | STH1113 | STH1798 | Conserved hypothetical protein. | Conserved hypothetical protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.426 |
STH1723 | STH1795 | STH1723 | STH1795 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.436 |
STH1723 | ku | STH1723 | STH1798 | Conserved hypothetical protein. | Conserved hypothetical protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.478 |
STH1795 | STH1113 | STH1795 | STH1113 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.439 |
STH1795 | STH1723 | STH1795 | STH1723 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.436 |
STH1795 | STH1796 | STH1795 | STH1796 | Conserved hypothetical protein. | Hypothetical protein. | 0.773 |
STH1795 | STH1797 | STH1795 | STH1797 | Conserved hypothetical protein. | ATP-dependent DNA ligase. | 0.999 |
STH1795 | STH1799 | STH1795 | STH1799 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.412 |
STH1795 | STH2899 | STH1795 | STH2899 | Conserved hypothetical protein. | DNA-dependent DNA polymerase family X. | 0.447 |
STH1795 | STH886 | STH1795 | STH886 | Conserved hypothetical protein. | ATP-dependent DNA helicase. | 0.519 |
STH1795 | ku | STH1795 | STH1798 | Conserved hypothetical protein. | Conserved hypothetical protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.969 |
STH1796 | STH1795 | STH1796 | STH1795 | Hypothetical protein. | Conserved hypothetical protein. | 0.773 |
STH1796 | STH1797 | STH1796 | STH1797 | Hypothetical protein. | ATP-dependent DNA ligase. | 0.697 |
STH1796 | ku | STH1796 | STH1798 | Hypothetical protein. | Conserved hypothetical protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.697 |
STH1797 | STH1113 | STH1797 | STH1113 | ATP-dependent DNA ligase. | Conserved hypothetical protein. | 0.425 |
STH1797 | STH1795 | STH1797 | STH1795 | ATP-dependent DNA ligase. | Conserved hypothetical protein. | 0.999 |
STH1797 | STH1796 | STH1797 | STH1796 | ATP-dependent DNA ligase. | Hypothetical protein. | 0.697 |
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