STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY30000.1Ycf34; PFAM: Hypothetical chloroplast protein Ycf34; manually curated. (85 aa)    
Predicted Functional Partners:
AFY30001.1
PFAM: Glycoprotease family; TIGRFAM: universal bacterial protein YeaZ.
 
     0.848
AFY30002.1
Hypothetical protein; PFAM: DUF218 domain.
       0.784
AFY30185.1
PFAM: Domain of unknown function (DUF1825).
  
     0.775
AFY30360.1
PFAM: Cytochrome c.
  
     0.772
ndhO
Cyanobacterial and plant NDH-1 subunit O; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.
  
     0.771
AFY27354.1
Hypothetical protein.
  
     0.770
AFY27358.1
Hypothetical protein; Manually curated.
  
     0.770
AFY29757.1
Hypothetical protein.
  
     0.769
AFY30096.1
Hypothetical protein.
  
     0.769
secE
Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.768
Your Current Organism:
Cyanobium gracile
NCBI taxonomy Id: 292564
Other names: C. gracile PCC 6307, Coccochloris peniocystis UTCC 70 (no longer available), Coccochloris peniocystis UTCC 71, Cyanobium gracile PCC 6307, Synechococcus sp. ATCC 27147, Synechococcus sp. PCC 6307
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