STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT89516.1ABC transporter. (276 aa)    
Predicted Functional Partners:
GAT89517.1
ABC transporter.
 0.983
GAT89518.1
ABC transporter substrate-binding protein.
 
  0.971
GAT89301.1
Sugar ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.920
GAT88017.1
Sugar ABC transporter permease.
  0.916
GAT85368.1
Sugar ABC transporter permease.
 0.909
GAT88029.1
Sugar ABC transporter permease.
 0.907
GAT85420.1
ABC transporter permease.
  0.895
GAT88099.1
Sugar ABC transporter permease.
 0.892
GAT88349.1
Hypothetical protein.
 
  0.890
GAT85683.1
Sugar ABC transporter permease.
 
 0.875
Your Current Organism:
Paenarthrobacter nicotinovorans
NCBI taxonomy Id: 29320
Other names: ATCC 49919, Arthrobacter nicotinivorans, Arthrobacter nicotinovorans, Arthrobacter oxydans DSM 420, CIP 106990, DSM 420, IFO 15511, JCM 3874, LMG 16253, LMG:16253, NBRC 15511, P. nicotinovorans
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