Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| GAT85378.1 | GAT85931.1 | CVCC1112_38 | CVCC1112_591 | NUDIX hydrolase. | Ribonuclease II. | 0.770 |
| GAT85378.1 | rph | CVCC1112_38 | CVCC1112_818 | NUDIX hydrolase. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.630 |
| GAT85931.1 | GAT85378.1 | CVCC1112_591 | CVCC1112_38 | Ribonuclease II. | NUDIX hydrolase. | 0.770 |
| GAT85931.1 | GAT86703.1 | CVCC1112_591 | CVCC1112_1361 | Ribonuclease II. | 30S ribosomal protein S1. | 0.822 |
| GAT85931.1 | GAT87023.1 | CVCC1112_591 | CVCC1112_1682 | Ribonuclease II. | Ribonuclease E. | 0.844 |
| GAT85931.1 | GAT87206.1 | CVCC1112_591 | CVCC1112_1865 | Ribonuclease II. | Ribonuclease P; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.792 |
| GAT85931.1 | GAT88164.1 | CVCC1112_591 | CVCC1112_2823 | Ribonuclease II. | Ribonuclease D. | 0.986 |
| GAT85931.1 | GAT88714.1 | CVCC1112_591 | CVCC1112_3374 | Ribonuclease II. | NUDIX hydrolase. | 0.770 |
| GAT85931.1 | GAT88948.1 | CVCC1112_591 | CVCC1112_3607 | Ribonuclease II. | NUDIX hydrolase; Belongs to the Nudix hydrolase family. | 0.770 |
| GAT85931.1 | pnp | CVCC1112_591 | CVCC1112_3243 | Ribonuclease II. | Polynucleotide phosphorylase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.728 |
| GAT85931.1 | rph | CVCC1112_591 | CVCC1112_818 | Ribonuclease II. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.986 |
| GAT85931.1 | rpsO | CVCC1112_591 | CVCC1112_3244 | Ribonuclease II. | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.772 |
| GAT86703.1 | GAT85931.1 | CVCC1112_1361 | CVCC1112_591 | 30S ribosomal protein S1. | Ribonuclease II. | 0.822 |
| GAT86703.1 | GAT87206.1 | CVCC1112_1361 | CVCC1112_1865 | 30S ribosomal protein S1. | Ribonuclease P; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.777 |
| GAT86703.1 | GAT88164.1 | CVCC1112_1361 | CVCC1112_2823 | 30S ribosomal protein S1. | Ribonuclease D. | 0.980 |
| GAT86703.1 | pnp | CVCC1112_1361 | CVCC1112_3243 | 30S ribosomal protein S1. | Polynucleotide phosphorylase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.686 |
| GAT86703.1 | rph | CVCC1112_1361 | CVCC1112_818 | 30S ribosomal protein S1. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.927 |
| GAT86703.1 | rpsO | CVCC1112_1361 | CVCC1112_3244 | 30S ribosomal protein S1. | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.983 |
| GAT87023.1 | GAT85931.1 | CVCC1112_1682 | CVCC1112_591 | Ribonuclease E. | Ribonuclease II. | 0.844 |
| GAT87023.1 | GAT87206.1 | CVCC1112_1682 | CVCC1112_1865 | Ribonuclease E. | Ribonuclease P; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.837 |
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