STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ylbJSporulation integral membrane protein YlbJ. (400 aa)    
Predicted Functional Partners:
OPJ56990.1
Putative stage IV sporulation protein YqfD.
 
   
 0.839
spoIIIAE
Stage III sporulation protein AE precursor.
 
    0.803
OPJ56939.1
Stage III sporulation protein AC/AD protein family protein.
 
     0.799
spoIIGA
Sporulation sigma-E factor-processing peptidase; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
   
 0.798
OPJ54808.1
Stage II sporulation protein SpoIIR.
  
   
 0.795
OPJ56942.1
Hypothetical protein.
 
   
 0.794
OPJ56936.1
Hypothetical protein; Transcription termination factor Rho.
 
   
 0.793
yabP
Spore protein YabP.
  
   
 0.791
spoIVA
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
   
 0.789
spoIVB
SpoIVB peptidase precursor.
 
     0.783
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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