Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
yaaH_1Spore germination protein YaaH. (297 aa)    
Predicted Functional Partners:
cwlC_1
Sporulation-specific N-acetylmuramoyl-L-alanine amidase.
  
 
 0.962
cwlC_2
Sporulation-specific N-acetylmuramoyl-L-alanine amidase.
  
 
 0.962
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
 0.881
lytC
N-acetylmuramoyl-L-alanine amidase LytC precursor.
  
 
 0.867
prxU
Selenocysteine-containing peroxiredoxin PrxU; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.
   
 0.850
thrZ_2
threonine--tRNA ligase 2.
    
 0.809
spoVD_1
Stage V sporulation protein D.
   
 0.772
yaaH_3
Spore germination protein YaaH.
 
     0.758
mepM_2
Murein DD-endopeptidase MepM.
    
 0.717
yneA
Cell division suppressor protein YneA.
  
 
 0.707
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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