Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
mepM_2Murein DD-endopeptidase MepM. (451 aa)    
Predicted Functional Partners:
fliN
Flagellar motor switch protein FliN.
   
   0.780
yaaH_1
Spore germination protein YaaH.
    
 0.717
pepN
Aminopeptidase N.
     
 0.641
htrB
Serine protease Do-like HtrB.
     
 0.632
spoVD_1
Stage V sporulation protein D.
 
   
 0.626
mrcA
Penicillin-binding protein 1A.
  
   
 0.619
yycJ
Putative metallo-hydrolase YycJ.
       0.610
OPJ55424.1
Replication initiation and membrane attachment.
       0.602
dnaI
Primosomal protein DnaI.
       0.600
rlmH
Ribosomal RNA large subunit methyltransferase H; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
  
    0.580
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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