STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ54962.1Hypothetical protein. (403 aa)    
Predicted Functional Partners:
sigX
RNA polymerase sigma factor SigX; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.778
OPJ54963.1
Hypothetical protein.
       0.752
cwlC_1
Sporulation-specific N-acetylmuramoyl-L-alanine amidase.
  
 
 0.546
cwlC_2
Sporulation-specific N-acetylmuramoyl-L-alanine amidase.
  
 
 0.546
opuD
Glycine betaine transporter OpuD; Belongs to the BCCT transporter (TC 2.A.15) family.
       0.531
uvrC
UvrABC system protein C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
       0.531
hprK
HPr kinase/phosphorylase; Catalyzes the ATP- as well as the pyrophosphate-dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK/P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P-Ser-HPr). The two antagonistic activities of HprK/P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon [...]
       0.531
lytC
N-acetylmuramoyl-L-alanine amidase LytC precursor.
   
   0.516
amiC
N-acetylmuramoyl-L-alanine amidase AmiC precursor.
    
   0.513
cwlD
Germination-specific N-acetylmuramoyl-L-alanine amidase precursor.
    
   0.513
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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