STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ55005.1Phage antirepressor protein KilAC domain protein. (250 aa)    
Predicted Functional Partners:
OPJ55007.1
Hypothetical protein.
 
     0.913
OPJ55006.1
Hypothetical protein.
 
     0.862
OPJ55002.1
PD-(D/E)XK nuclease superfamily protein.
 
   
 0.819
OPJ55000.1
Hypothetical protein.
 
    0.813
OPJ55001.1
Hypothetical protein.
 
     0.745
OPJ55003.1
Hypothetical protein.
 
     0.691
polA_2
DNA polymerase I, thermostable.
 
     0.682
OPJ56190.1
Hypothetical protein.
 
     0.677
lexA
LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.
  
  
 0.639
OPJ56187.1
Virulence-associated protein E.
 
     0.635
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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