Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
A1C_00305 | alr-2 | A1C_00305 | A1C_00730 | Hypothetical protein; COG0802 Predicted ATPase or kinase. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.639 |
A1C_00715 | A1C_00725 | A1C_00715 | A1C_00725 | Ribose-phosphate pyrophosphokinase; COG0462 Phosphoribosylpyrophosphate synthetase. | Hypothetical protein. | 0.444 |
A1C_00715 | alr | A1C_00715 | A1C_00720 | Ribose-phosphate pyrophosphokinase; COG0462 Phosphoribosylpyrophosphate synthetase. | Alanine racemase; COG0462 Phosphoribosylpyrophosphate synthetase. | 0.447 |
A1C_00715 | alr-2 | A1C_00715 | A1C_00730 | Ribose-phosphate pyrophosphokinase; COG0462 Phosphoribosylpyrophosphate synthetase. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.554 |
A1C_00725 | A1C_00715 | A1C_00725 | A1C_00715 | Hypothetical protein. | Ribose-phosphate pyrophosphokinase; COG0462 Phosphoribosylpyrophosphate synthetase. | 0.444 |
A1C_00725 | alr | A1C_00725 | A1C_00720 | Hypothetical protein. | Alanine racemase; COG0462 Phosphoribosylpyrophosphate synthetase. | 0.768 |
A1C_00725 | alr-2 | A1C_00725 | A1C_00730 | Hypothetical protein. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.773 |
alr | A1C_00715 | A1C_00720 | A1C_00715 | Alanine racemase; COG0462 Phosphoribosylpyrophosphate synthetase. | Ribose-phosphate pyrophosphokinase; COG0462 Phosphoribosylpyrophosphate synthetase. | 0.447 |
alr | A1C_00725 | A1C_00720 | A1C_00725 | Alanine racemase; COG0462 Phosphoribosylpyrophosphate synthetase. | Hypothetical protein. | 0.768 |
alr | alr-2 | A1C_00720 | A1C_00730 | Alanine racemase; COG0462 Phosphoribosylpyrophosphate synthetase. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.768 |
alr-2 | A1C_00305 | A1C_00730 | A1C_00305 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | Hypothetical protein; COG0802 Predicted ATPase or kinase. | 0.639 |
alr-2 | A1C_00715 | A1C_00730 | A1C_00715 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | Ribose-phosphate pyrophosphokinase; COG0462 Phosphoribosylpyrophosphate synthetase. | 0.554 |
alr-2 | A1C_00725 | A1C_00730 | A1C_00725 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | Hypothetical protein. | 0.773 |
alr-2 | alr | A1C_00730 | A1C_00720 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | Alanine racemase; COG0462 Phosphoribosylpyrophosphate synthetase. | 0.768 |
alr-2 | dapB | A1C_00730 | A1C_01055 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate. | 0.576 |
alr-2 | ddl | A1C_00730 | A1C_01810 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | D-alanine--D-alanine ligase; Cell wall formation. | 0.968 |
alr-2 | lgt | A1C_00730 | A1C_00395 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | Putative carbamate kinase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family. | 0.676 |
alr-2 | murC | A1C_00730 | A1C_01800 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.588 |
alr-2 | murD | A1C_00730 | A1C_03050 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.720 |
alr-2 | murF | A1C_00730 | A1C_04665 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.963 |
page 1 of 3