STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_0199Hypothetical protein. (244 aa)    
Predicted Functional Partners:
Amet_0200
Hypothetical protein; KEGG: rde:RD1_A0043 RC169.
       0.746
Amet_0201
PFAM: sugar transferase; KEGG: bha:BH3716 galactosyltransferase.
       0.578
Amet_0202
PFAM: Heparinase II/III family protein; KEGG: gme:Gmet_1501 heparinase II/III-like.
       0.531
Amet_0203
PFAM: glycosyl transferase, group 1; KEGG: gme:Gmet_1502 glycosyl transferase, group 1.
       0.531
Amet_0204
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; Male sterility C-terminal domain; KEGG: pme:NATL1_08611 hypothetical protein.
       0.517
Amet_0198
Hypothetical protein; KEGG: tte:TTE1265 type IV pilus assembly protein PilA.
       0.437
Amet_0205
PFAM: glycosyl transferase, group 1; KEGG: pab:PAB1604 LPS biosynthesis RfbU related protein.
       0.402
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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