STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pduLPropanediol utilization protein; Involved in 1,2-propanediol (1,2-PD) degradation by catalyzing the conversion of propanoyl-CoA to propanoyl-phosphate. (212 aa)    
Predicted Functional Partners:
Amet_0261
PFAM: cobalamin adenosyltransferase; KEGG: ctc:CTC02171 ethanolamine utilization protein.
    
 0.966
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
   
 0.956
buk
TIGRFAM: Butyrate kinase; PFAM: acetate and butyrate kinase; KEGG: gka:GK2380 butyrate kinase; Belongs to the acetokinase family.
     
 0.848
buk-2
TIGRFAM: Butyrate kinase; PFAM: acetate and butyrate kinase; KEGG: tte:TTE2201 butyrate kinase; Belongs to the acetokinase family.
     
 0.848
buk-3
TIGRFAM: Butyrate kinase; PFAM: acetate and butyrate kinase; KEGG: ctc:CTC02545 butyrate kinase; Belongs to the acetokinase family.
     
 0.848
Amet_0265
PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: dde:Dde_3273 ethanolamine utilization protein EutN.
 
   
 0.760
Amet_0263
TIGRFAM: ethanolamine utilization protein EutJ family protein; KEGG: ctc:CTC02168 ethanolamine utilization protein EutJ.
       0.750
Amet_0264
Hypothetical protein; KEGG: ctc:CTC02167 putative ethanolamine utilization protein.
       0.739
Amet_0267
PFAM: microcompartments protein; KEGG: maq:Maqu_1244 microcompartments protein.
 
  
 0.721
Amet_0266
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: lmf:LMOf2365_1149 PduS protein.
     
 0.664
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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