STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_0474KEGG: bca:BCE_2880 hypothetical protein. (110 aa)    
Predicted Functional Partners:
Amet_0475
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: cac:CAC0192 similar to chloromuconate cycloisomerase.
 
     0.736
Amet_2598
PFAM: protein of unknown function DUF1064; KEGG: lin:lin0099 hypothetical protein.
  
     0.468
Amet_4219
Putative transcriptional regulator, MerR family; PFAM: regulatory protein, MerR; Methyltransferase type 11; KEGG: btl:BALH_2398 possible transcriptional regulator, MerR family.
  
     0.460
Amet_2066
PFAM: NLP/P60 protein; KEGG: cac:CAC0190 beta-lactamase.
 
     0.418
Amet_2144
PFAM: sigma-70 region 4 domain protein; RNA polymerase, alpha subunit domain protein; KEGG: ppe:PEPE_0533 hypothetical protein.
  
     0.412
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.